Bacterial Genomics: Microarrays, Functional Genomics and Proteomics


Microarrays, Functional Genomics and Proteomics

http://genome-www5.stanford.edu//

Stanford Microarray database. It aims to be the site where microarray data are deposited and can be downloaded. A must for microarrays scientists. It has a very complete links page to different tools and software for microarray analysis.

http://www.mged.org/Workgroups/MIAME/miame.html

MIAME describes the Minimum Information About a Microarray Experiment that is needed to enable the interpretation of the results of the experiment unambiguously and potentially to reproduce the experiment.

http://www.functionalgenomics.org.uk/sections/programme/index.htm

website of the European Science Foundation Programme on Integrated Approaches for Functional Genomics.

http://base.thep.lu.se/

BASE - BioArray Software Environment. BASE is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. 

http://www.pdg.cnb.uam.es/UniPub/iHOP/

Information hyperlinked over proteins. You can choose a protein and get all published info.

http://us.expasy.org/enzyme/

Enzyme nomenclature database.

http://pbil.univ-lyon1.fr/databases/hogenom.html

HOGENOM is a database of homologous genes from fully sequenced organisms, structured under ACNUC sequence database management system. It allows one to select sets of homologous genes among species, and to visualize multiple alignments and phylogenetic trees. Thus HOGENOM is particularly useful for comparative sequence analysis, phylogeny and molecular evolution studies. More generaly, HOGENOM gives an overall view of what is known about a peculiar gene family.

http://www.tigr.org/TIGRFAMs/

TIGRFAMs are protein families based on Hidden Markov Models or HMMs. Use this page to see the curated seed alignmet for each TIGRFAM, the full alignment of all family members and the cutoff scores for inclusion in each of the TIGRFAMs.

 


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