Bacterial Genomics: Genome Composition


Genome Composition

http://www.kazusa.or.jp/codon/

Codon usage across all organisms. It includes not only fully sequenced genomes but also species for which up to 1 single sequence is available for calculations.

http://www.cbs.dtu.dk/services/GenomeAtlas/

A Danish database indicating origin/terminus of replication, G+C content, sigma factors, repeats, chromosome coiling, etc)

http://pbil.univ-lyon1.fr/software/Oriloc/index.html  

A widely-used free software to determine replication origin and terminus based on GC and AT skews.

http://insilico.ehu.es/oligoweb/

This site is focussed on Oligonucleotide usage. Several tools, graphic representations and downloadable data related to oligonucleotide frecuency of sequenced prokaryotes is available.

http://tandem.bu.edu/trf/trf.html

Tandem Repeats finder in sequenced bacterial genomes and sequences from the user

 


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