List of sequencing projects published or on-going at MICROGEN project


Genome projects
Strain Technology Size Accesion GI Comments
Extra information 
GROUP 
10.1 Illumina-HiSeq Isolate directly from soil UPM
10.58 Illumina-HiSeq Isolate directly from soil UPM
10157 Illumina-HiSeq Isolate directly from soil UPM
11.17 Illumina-HiSeq Isolate directly from soil UPM
11.31 Illumina-HiSeq Isolate directly from soil UPM
11101 Illumina-HiSeq Isolate directly from soil UPM
11185 Illumina-HiSeq Isolate directly from soil UPM
11190 Illumina-HiSeq Isolate directly from soil UPM
12.24 Illumina-HiSeq Isolate directly from soil UPM
12.76 Illumina-HiSeq Isolate directly from soil UPM
13.31 Illumina-HiSeq Isolate directly from soil UPM
13.42 Illumina-HiSeq Isolate directly from soil UPM
13.65 Illumina-HiSeq Isolate directly from soil UPM
3A.12 Illumina-HiSeq Isolate directly from soil UPM
3A.21 Illumina-HiSeq Isolate directly from soil UPM
3A.24 Illumina-HiSeq Isolate directly from soil UPM
3A.30 Illumina-HiSeq Isolate directly from soil UPM
3A.33 Illumina-HiSeq Isolate directly from soil UPM
3B.44 Illumina-HiSeq Isolate directly from soil UPM
3B.49 Illumina-HiSeq Isolate directly from soil UPM
4.10 Illumina-HiSeq Isolate directly from soil UPM
5.24 Illumina-HiSeq Isolate directly from soil UPM
5.54 Illumina-HiSeq Isolate directly from soil UPM
5.61 Illumina-HiSeq Isolate directly from soil UPM
6.40 Illumina-HiSeq Isolate directly from soil UPM
6.90 Illumina-HiSeq Isolate directly from soil UPM
6154 Illumina-HiSeq Isolate directly from soil UPM
6190 Illumina-HiSeq Isolate directly from soil UPM
6200 Illumina-HiSeq Isolate directly from soil UPM
7.1 Illumina-HiSeq Isolate directly from soil UPM
7.44 Illumina-HiSeq Isolate directly from soil UPM
7.51 Illumina-HiSeq Isolate directly from soil UPM
7.7 Illumina-HiSeq Isolate directly from soil UPM
7109 Illumina-HiSeq Isolate directly from soil UPM
8.13 Illumina-HiSeq Isolate directly from soil UPM
8.69 Illumina-HiSeq Isolate directly from soil UPM
9.12 Illumina-HiSeq Isolate directly from soil UPM
9.20 Illumina-HiSeq Isolate directly from soil UPM
9.31 Illumina-HiSeq Isolate directly from soil UPM
9109 Illumina-HiSeq Isolate directly from soil UPM
9112 Illumina-HiSeq Isolate directly from soil UPM
Alteromonas Mac_S2_MA12%_AC16 Illumina-HiSeq2000   DRAFT UMH
Alteromonas Mac_S2_MA12%_AC21 Illumina-HiSeq2000   DRAFT UMH
Alteromonas Mac_S2_MA12%_AC23 Illumina-HiSeq2000   DRAFT UMH
Alteromonas Mac_S2_MA12%_AC24 Illumina-HiSeq2000   DRAFT UMH
Alteromonas Mac_S2_MA12%_AC4 Illumina-HiSeq2000   DRAFT UMH
Alteromonas Mac_S2_MA12%_AC6 Illumina-HiSeq2000   DRAFT UMH
Alteromonas macleodii UM4b Illumina-HiSeq2000 4,407,104 CP004855  UMH
Alteromonas macleodii 615 Illumina-HiSeq2000 4,389,661 CP004846  UMH
Alteromonas macleodii 673 454+HiSeq2000 4,602,068 CP003844  UMH
Alteromonas macleodii AD45 454+HiSeq2000 4,628,907 CP003873  UMH
Alteromonas macleodii AltATCC 454+HiSeq2000 4,607,844 CP003841  UMH
Alteromonas macleodii AltDE 454+HiSeq2000 4,480,937 CP001103  UMH
Alteromonas macleodii AltDE1 454+HiSeq2000 4,643,844 CP003917  UMH
Alteromonas macleodii Am170 Illumina-HiSeq2000 4,505,246  DRAFT UMH
Alteromonas macleodii BS11 454+HiSeq2000 4,480,507 CP003845  UMH
Alteromonas macleodii BS7 Illumina-HiSeq2000 4478974  DRAFT UMH
Alteromonas macleodii BS8 Illumina-HiSeq2000 4433518  DRAFT UMH
Alteromonas macleodii D7 Illumina-HiSeq2000 4,380,082  DRAFT UMH
Alteromonas macleodii H84 Illumina-HiSeq2000 4480841  DRAFT UMH
Alteromonas macleodii H94 Illumina-HiSeq2000 4482874  DRAFT UMH
Alteromonas macleodii MED64 Illumina-HiSeq2000 4,397,537 CP004848  UMH
Alteromonas macleodii U10 Illumina-HiSeq2000  Sequencing UMH
Alteromonas macleodii U4 Illumina-HiSeq2000 4,487,701 CP004849  UMH
Alteromonas macleodii U7 Illumina-HiSeq2000 4,442,936 CP004851  UMH
Alteromonas macleodii U8/U12 Illumina-HiSeq2000 4,395,035 CP004852  UMH
Alteromonas macleodii UM7/UM8 Illumina-HiSeq2000 4,628,423 CP004853  UMH
Brevibacillus sp. strain 10 454 5.5 Mb  DRAFT UGR
Brevibacillus sp. strain 10 Illumina 5.5 Mb  Being sequenced UGR
Cyanobacteria isolated from Rio Tinto Illumina ±7 Mb  Being sequenced UGR
Fervidobacterium thailandensis strain 2004 454+Illumina 2.0 Mb  Being sequenced  UGR
G10 Illumina-HiSeq Isolate from pea nodules UPM
G108 Illumina-HiSeq Isolate from pea nodules UPM
G109 Illumina-HiSeq Isolate from pea nodules UPM
G16 Illumina-HiSeq Isolate from pea nodules UPM
G28 Illumina-HiSeq Isolate from pea nodules UPM
G4 Illumina-HiSeq Isolate from pea nodules UPM
G51 Illumina-HiSeq Isolate from pea nodules UPM
G51 Illumina-HiSeq Isolate from pea nodules UPM
G67 Illumina-HiSeq Isolate from pea nodules UPM
G67 Illumina-HiSeq Isolate from pea nodules UPM
G7 Illumina-HiSeq Isolate from pea nodules UPM
G73 Illumina-HiSeq Isolate from pea nodules UPM
G73 Illumina-HiSeq Isolate from pea nodules UPM
G77 Illumina-HiSeq Isolate from pea nodules UPM
G77 Illumina-HiSeq Isolate from pea nodules UPM
G8 Illumina-HiSeq Isolate from pea nodules UPM
G83 Illumina-HiSeq Isolate from pea nodules UPM
G88 Illumina-HiSeq Isolate from pea nodules UPM
G93 Illumina-HiSeq Isolate from pea nodules UPM
G94 Illumina-HiSeq Isolate from pea nodules UPM
G99 Illumina-HiSeq Isolate from pea nodules UPM
H11 Illumina-HiSeq Isolate from fava-bean nodules UPM
H117 Illumina-HiSeq Isolate from fava-bean nodules UPM
H12 Illumina-HiSeq Isolate from fava-bean nodules UPM
H127 Illumina-HiSeq Isolate from fava-bean nodules UPM
H130 Illumina-HiSeq Isolate from fava-bean nodules UPM
H132 Illumina-HiSeq Isolate from fava-bean nodules UPM
H139 Illumina-HiSeq Isolate from fava-bean nodules UPM
H174 Illumina-HiSeq Isolate from fava-bean nodules UPM
H178 Illumina-HiSeq Isolate from fava-bean nodules UPM
H31 Illumina-HiSeq Isolate from fava-bean nodules UPM
H5 Illumina-HiSeq Isolate from fava-bean nodules UPM
H82 Illumina-HiSeq Isolate from fava-bean nodules UPM
Halonotius pterides Illumina-HiSeq2000  Sequencing UMH
Halorubrum spp. Illumina-HiSeq2000  Sequencing UMH
Illumatobacter fluminis Illumina-HiSeq2000  Sequencing UMH
L102 Illumina-HiSeq Isolate from lentil nodules UPM
L104 Illumina-HiSeq Isolate from lentil nodules UPM
L106 Illumina-HiSeq Isolate from lentil nodules UPM
L111 Illumina-HiSeq Isolate from lentil nodules UPM
L117 Illumina-HiSeq Isolate from lentil nodules UPM
L70 Illumina-HiSeq Isolate from lentil nodules UPM
L74 Illumina-HiSeq Isolate from lentil nodules UPM
L79 Illumina-HiSeq Isolate from lentil nodules UPM
L8 Illumina-HiSeq Isolate from lentil nodules UPM
L82 Illumina-HiSeq Isolate from lentil nodules UPM
L9 Illumina-HiSeq Isolate from lentil nodules UPM
L99 Illumina-HiSeq Isolate from lentil nodules UPM
Mac_S1_E_SW_E3_ab1  Illumina-HiSeq2000   DRAFT UMH
Mac_S1_E_SW_E3_ab2 Illumina-HiSeq2000   DRAFT UMH
Mac_S1_E_SW_E4_ab1 Illumina-HiSeq2000   DRAFT UMH
Mac_S1_E_SW_E4_ab2  Illumina-HiSeq2000   DRAFT UMH
Mac_S1_E_SW_ET1  Illumina-HiSeq2000   DRAFT UMH
Mac_S1_E_SW_ET2 Illumina-HiSeq2000   DRAFT UMH
Oceanobacillus spp.  Illumina MiSeq, pair-end, 250bp 3.6 Mbp  Sequencing UPV/EHU
Pseudomonas stutzeri 123 ST    Sequencing UIB
Pseudomonas stutzeri 125 ST    Sequencing UIB
Pseudomonas stutzeri 130 ST    Sequencing UIB
Pseudomonas stutzeri 136 ST    Sequencing UIB
Pseudomonas stutzeri 137 ST    Sequencing UIB
Pseudomonas stutzeri 145 ST    Sequencing UIB
Pseudomonas stutzeri 146 ST    Sequencing UIB
Pseudomonas stutzeri 147 ST    Sequencing UIB
Pseudomonas stutzeri 161 ST    Sequencing UIB
Pseudomonas stutzeri 163 ST    Sequencing UIB
Pseudomonas stutzeri I24    Sequencing UIB
Pseudomonas stutzeri R10    Sequencing UIB
Salmonella enterica 4,5,12:i:- monophasic strain 1536 Illumina MiSeq, pair-end, 250bp 4.80 Mbp  Sequencing UGR
Salmonella enterica 4,5,12:i:- monophasic strain 1566 Illumina MiSeq, pair-end, 250bp 4.86 Mbp  Sequencing UGR
Salmonella enterica 4,5,12:i:- monophasic strain 2054 Illumina MiSeq, pair-end, 250bp 4.71 Mbp  Sequencing UGR
Sinorhizobium melilotistrain AK21 454-FLX Titanium ¿? ON GOING
Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries 
EEZ-CSIC
Sinorhizobium melilotistrain GR4 454-FLX Titanium 7.14 Mb CP003933
CP003934
CP003935
CP003936
CP003937 
Martínez-Abarca F, et al.Genome Announc. 2013 doi:pii: e00174-12.
Complete sequence of the five replicons. Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries 
EEZ-CSIC
Sinorhizobium melilotistrain RMO17 454-FLX Titanium ¿? ON GOING
Sequencing was performed on a GS FLX Titanium platform (Roche Diagnostics) at MACROGEN Inc. (Korea) on the basis of both, shotgun and 3 Kb paired-end libraries 
EEZ-CSIC
Spiribacter salinus Illumina-HiSeq2000 2.7 Mb Close UMH
Sthaphylococcus aureus human strains ST121 (8 strains) 454 + pair end 2,7 Mb(each one)  draft UGR
Sthaphylococcus aureus human strains ST121 (8 strains) 454 2,7 Mb(each one)  draft UGR
Sthaphylococcus aureus ovine adaptation experiement (110 strains) 454 2,7 Mb (each strain)  sequencing UGR
Sthaphylococcus aureus rabbit strain ST121  454 2,7 Mb  close UGR
Sthaphylococcus aureus rabbit strains ST121 (3 strains) 454 + pair end 2,7 Mb(each one)  draft UGR
Sthaphylococcus aureus rabbit strains ST121 (3 strains) 454 2,7 Mb(each one)  draft UGR
Streptococcus dentisani 7746 454 shot-gun and pair ends 2.3 Mbp Patented strain, new species CSISP
Streptococcus dentisani 7747 454 shot-gun and pair ends 2.3 Mbp Patented strain, new species CSISP
Ureibacillus sp. strain 12 454 6.4 Mb  DRAFT UGR
Ureibacillus sp. strain 12 Illumina 6.4 Mb  DRAFT UGR
V10 Illumina-HiSeq Isolate from vetch nodules UPM
V100 Illumina-HiSeq Isolate from vetch nodules UPM
V116 Illumina-HiSeq Isolate from vetch nodules UPM
V14 Illumina-HiSeq Isolate from vetch nodules UPM
V2 Illumina-HiSeq Isolate from vetch nodules UPM
V30 Illumina-HiSeq Isolate from vetch nodules UPM
V4 Illumina-HiSeq Isolate from vetch nodules UPM
V43 Illumina-HiSeq Isolate from vetch nodules UPM
V50 Illumina-HiSeq Isolate from vetch nodules UPM
V51 Illumina-HiSeq Isolate from vetch nodules UPM
V57 Illumina-HiSeq UMH

Metagenome and metatranscriptome projects
Description Habitat Technology Size Accesion GI Comments
Extra information 
GROUP 
16S rDNA Amplicons Mamillaria carnea rhizosphere 454-FLX 28000 reads of 405 nt European Read Archive (Accs nr: ERP000672) Torres-Cortes et al. 2012 Plant and Soil 357: 275-288. 2012. EEZ-CSIC
DCM fosmids 6000 fosmids from the Deep chlorophyll maximum in the Mediterranean Illumina 2 Illumina lanes, ~80GB total   UGR
DCM-0.1um filtrate metagenome Metagenome of Mediterranean DCM 454 11MB   UGR
DCM-Aug29 Metagenome of Mediterranean DCM Illumina 5GB   UGR
DCM-Jul20 Metagenome of Mediterranean DCM Illumina 5GB   UGR
DCM-virome Metavirome of Mediterranean DCM Illumina 16GB   UGR
Dental Caries Metatranscriptome Enamel and dental caries lesions Illumina 100 bp single-ends 16 Gbp   UGR
Metagenome Cavities (enamel and dentin caries) 454 Titanium 200 Mbp NCBI Sequence Read Archive under accession numbers 4447970.3 4447971.3 4450726.3. Published Caries Research 2013 CSISP
Metagenome Chimpanzee’s dental plaque 454 Titanium 250 Mbp Pending -- CSISP
Metagenome Dental plaque 454 Titanium 1 Gbp MG-RAST server “Oral Microbiome” project Published ISME J 2012 CSISP
Metagenome: rhizosphere of burned holm-oaks Mediterranean Forest at Sierra Nevada National Park 454 GS FLX Titanium 80 Mbp  MG-RAST server: 4465558.3 Submitted to Environmental Microbiology EEZ-CSIC
Metagenome: rhizosphere of wild holm-oaks MediterraneanForest at Sierra Nevada National Park 454 GS FLX Titanium 160 Mbp MG-RAST server: 4465556.3 Submitted to Environmental Microbiology EEZ-CSIC
Metatranscriptome Human Dental plaque before and after a meal 454 Titanium 100 Mbp MG-RAST server, “Oral Metatranscriptome” project, id 935 Benitez-Paez et al. 2014, BMC Genomics CSISP
Metatranscriptome Human Oral Biofilm through time Illumina 50 bp single ends 16 Gbp MG-RAST server, “Oral Metatranscriptome” project, id 935 Benitez-Paez et al. 2014, BMC Genomics CSISP
PoolSeq of fava-bean plants Nodules of fava-bean plants Illumina-HiSeq 5,6 Gb Pool of a hundred isolates UPM
PoolSeq of pea Isolates Nodules of pea plants Illumina-HiSeq 5,4 Gb Pool of a hundred isolates UPM
PoolSeq of soil isolates Isolates directly from soil Illumina-HiSeq 4,8 Gb Pool of a hundred and nineteen isolates UPM
PoolSeq of vetch plants Nodules of vetch plants Illumina-HiSeq 5,4 Gb Pool of a hundred isolates UPM
Poolseq of lentil plasnt Nodules of lentil plants Illumina-HiSeq 5,6 Gb Pool of a hundred isolates UPM
SS32 Solar salter crystallizer pond of 32% salinity (Winter simple) 454 176 MB   UGR
SS37 Solar saltern crystallizer pond of 37% salinity (summer sample) 454 309 MB SRP007685  UGR
SS37-illumina Solar saltern crystallizer pond of 37% salinity (summer sample) Illumina 6 GB   UGR
Salburua wetland 2013/04/17 Fresh water, 1 meter deep Illumina HiSeq 12.8 Gb  UPV/EHU
Salburua wetland 2013/04/23 Fresh water, 1 meter deep Illumina-HiSeq 8.3 Gb  UPV/EHU
Salburua wetland 2013/05/06 Fresh water, 1 meter deep Illumina-HiSeq 12.7 Gb  UPV/EHU
Salburua wetland 2013/05/22 Fresh water, 1 meter deep Illumina-HiSeq 6.3 Gb  UPV/EHU
Salburua wetland 2013/06/03 Fresh water, 1 meter deep Illumina-HiSeq 6.7 Gb  UPV/EHU
Salburua wetland 2013/06/25 Fresh water, 1 meter deep Illumina-HiSeq 9.5 Gb  UPV/EHU
Salburua wetland 2013/07/08 Fresh water, 1 meter deep Illumina-HiSeq 8.2 Gb  UPV/EHU
Salburua wetland 2013/07/15 Fresh water, 1 meter deep Illumina-HiSeq 11.7 Gb  UPV/EHU
Solar saltern 0.1um filtrate Metagenome of solar saltern 19% pond 454 39MB   UGR
Thermophilic enrichments Doñana National Park 454.Shotgun sequencing (3 runs) 1.5 Gb  A total of 35 samples from different zones and at different dates (including Beach, dune, floodplain, sediment) UGR
Thermophilic enrichments Doñana National Park Illumina 6 Gb  Three selected samples have been sequenced UGR
Torrevieja time series Torrevieja solar saltern time series (7 time points) 454 112 MB  Sequenced at EMBL, no mRNA enrichment CSISP

Transcriptome projects
Description Technology Accesion GI Comments
Extra information 
GROUP 
Alteromonas macleodii DE and AD1 (4 different contitions) Illumina-HiSeq UGR
Haloarcula marismortui (3 different conditions) Illumina-HiSeq UGR
Myxococcus xanthus Illumina-HiSeq UMH
S. meliloti HfqcoIP-RNA Illumina Completed. Manuscript in preparation EEZ-CSIC
Salinibacter ruber (4 different conditions) Illumina-HiSeq UGR
Streptococcus dentisani patented strains 7747 and 7746 Illumina 50 bp, single-ends -mRNA enrichment by riboZero kit (Epicentre) CSISP
Streptococcus mutans Illumina 50 bp single-ends -mRNA enrichment by riboZero kit (Epicentre) CSISP